A general rule for the relationship between hydrophobic effect and conformational stability of a protein: stability and structure of a series of hydrophobic mutants of human lysozyme.


Abstract

To get a general rule for the relationship between hydrophobic effect and conformational stability, five Ile to Val and nine Val to Ala mutants (3SS mutants) from 3SS (C77A/C95A) human lysozyme were constructed. As known from previous studies, the 3SS protein lacking a disulfide bond between Cys77 and Cys95 is destabilized by enthalpic factors, as revealed by a decrease of about 20 kJ/mol in the denaturation Gibbs energy change (DeltaG) value, as compared to the wild-type protein, which has four disulfide bonds. In this study, the stabilities and structures of the 3SS mutants were determined by differential scanning calorimetry and X-ray crystal analysis, respectively, and compared with those of the mutants (4SS mutants) from the wild-type (4SS) protein published previously. The stabilities of all the 3SS mutants, except for V110A-3SS were decreased as compared with that of the 3SS protein, coinciding with the results for the 4SS mutants. The change in the denaturation Gibbs energy change (DeltaDeltaG) values of the 3SS mutants relative to the 3SS protein at the denaturation temperature (49.2 degreesC) of the 3SS protein at pH 2.7 were similar to those of the equivalent 4SS mutants relative to the wild-type at 64.9 degreesC. The Delta DeltaG values of the 3SS mutants correlated with the changes in hydrophobic surface area exposed upon denaturation (Delta DeltaASAHP) for all of the hydrophobic residues when the effects of the secondary structure propensity were considered. This correlation is identical with that previously found for the 4SS mutants. The linear relation between Delta DeltaG and Delta DeltaASAHP for all of the hydrophobic residues with the same slope was found also for the mutants of T4 lysozyme already reported, indicating that this is a general relationship between changes in conformational stability and changes in ASA values of hydrophobic residues due to mutations. Study holds ProTherm entries: 3384, 3385, 3386, 3387, 3388, 3389, 3390, 3391, 3392, 3393, 3394, 3395, 3396, 3397, 3398, 4247, 4248, 4249, 4250, 4251, 4252, 4253, 4254, 4255, 4256, 4257, 4258, 4259, 4260, 4261, 4262, 4263, 4264, 4265, 4266, 4267, 4268, 4269, 4270, 4271, 4272, 4273, 4274, 4275, 4276, 4277, 4278, 4279, 4280, 4281, 4282, 4283, 4284, 4285, 4286, 4287, 4288, 4289, 4290, 4291, 4292, 4293, 4294, 4295, 4296, 4297, 4298, 4299, 4300, 4301, 4302, 4303, 4304, 4305, 4306, 4307, 4308, 4309, 4310, 4311, 4312, 4313, 4314, 4315, 14189, 14190, 14191, 14192, 14193, 14194, 14195, 14196, 14197, 14198, 14199, 14200, 14201, 14202 Extra Details: pseudo wild type human lysozyme, 1LHM (C77A, C95A) protein stability; hydrophobic effect; double mutant;,disulfide bond; human lysozyme

Submission Details

ID: dhrbFumS

Submitter: Connie Wang

Submission Date: April 24, 2018, 8:21 p.m.

Version: 1

Publication Details
Takano K;Yamagata Y;Yutani K,J. Mol. Biol. (1998) A general rule for the relationship between hydrophobic effect and conformational stability of a protein: stability and structure of a series of hydrophobic mutants of human lysozyme. PMID:9677301
Additional Information

Study Summary

Number of data points 301
Proteins Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Actin ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C ; Lysozyme C
Unique complexes 15
Assays/Quantities/Protocols Experimental Assay: dHvH pH:2.73 ; Experimental Assay: dHcal pH:2.87 ; Experimental Assay: Tm pH:2.87 ; Experimental Assay: dHvH pH:2.87 ; Experimental Assay: dHcal pH:3.13 ; Experimental Assay: Tm pH:3.13 ; Experimental Assay: dHvH pH:3.13 ; Experimental Assay: dHcal pH:2.9 ; Experimental Assay: Tm pH:2.9 ; Experimental Assay: dHvH pH:2.9 ; Experimental Assay: dHcal pH:3.15 ; Experimental Assay: Tm pH:3.15 ; Experimental Assay: dHvH pH:3.15 ; Experimental Assay: dHcal pH:2.54 ; Experimental Assay: Tm pH:2.54 ; Experimental Assay: dHvH pH:2.54 ; Experimental Assay: dHcal pH:2.72 ; Experimental Assay: Tm pH:2.72 ; Experimental Assay: dHvH pH:2.72 ; Experimental Assay: dHcal pH:2.5 ; Experimental Assay: Tm pH:2.5 ; Experimental Assay: dHvH pH:2.5 ; Experimental Assay: dHcal pH:2.88 ; Experimental Assay: Tm pH:2.88 ; Experimental Assay: dHvH pH:2.88 ; Experimental Assay: dHcal pH:2.51 ; Experimental Assay: Tm pH:2.51 ; Experimental Assay: dHvH pH:2.51 ; Experimental Assay: dHcal pH:2.69 ; Experimental Assay: Tm pH:2.69 ; Experimental Assay: dHvH pH:2.69 ; Experimental Assay: dHcal pH:2.85 ; Experimental Assay: Tm pH:2.85 ; Experimental Assay: dHvH pH:2.85 ; Experimental Assay: dHcal pH:3.03 ; Experimental Assay: Tm pH:3.03 ; Experimental Assay: dHvH pH:3.03 ; Experimental Assay: dHcal pH:3.16 ; Experimental Assay: Tm pH:3.16 ; Experimental Assay: dHvH pH:3.16 ; Experimental Assay: dHcal pH:2.71 ; Experimental Assay: Tm pH:2.71 ; Experimental Assay: dHvH pH:2.71 ; Experimental Assay: dHcal pH:3.02 ; Experimental Assay: Tm pH:3.02 ; Experimental Assay: dHvH pH:3.02 ; Experimental Assay: dHcal pH:2.79 ; Experimental Assay: Tm pH:2.79 ; Experimental Assay: dHvH pH:2.79 ; Experimental Assay: dHcal pH:2.68 ; Experimental Assay: Tm pH:2.68 ; Experimental Assay: dHvH pH:2.68 ; Experimental Assay: dCp temp:49.2 C, ionic:-: - ; Experimental Assay: ddG ; Experimental Assay: dHcal pH:2.82 ; Experimental Assay: Tm pH:2.82 ; Experimental Assay: dHvH pH:2.82 ; Experimental Assay: dHcal pH:2.97 ; Experimental Assay: Tm pH:2.97 ; Experimental Assay: dHvH pH:2.97 ; Experimental Assay: dHcal pH:3.17 ; Experimental Assay: Tm pH:3.17 ; Experimental Assay: dHvH pH:3.17 ; Experimental Assay: dHcal pH:2.86 ; Experimental Assay: Tm pH:2.86 ; Experimental Assay: dHvH pH:2.86 ; Experimental Assay: dHcal pH:2.55 ; Experimental Assay: Tm pH:2.55 ; Experimental Assay: dHvH pH:2.55 ; Experimental Assay: dHcal pH:2.73 ; Experimental Assay: Tm pH:2.73 ; Experimental Assay: dHcal pH:2.8 ; Experimental Assay: Tm pH:2.8 ; Experimental Assay: dHvH pH:2.8 ; Experimental Assay: dHcal pH:3.0 ; Experimental Assay: Tm pH:3.0 ; Experimental Assay: dHvH pH:3.0 ; Experimental Assay: dHcal pH:3.1 ; Experimental Assay: Tm pH:3.1 ; Experimental Assay: dHvH pH:3.1 ; Experimental Assay: dHcal pH:2.49 ; Experimental Assay: Tm pH:2.49 ; Experimental Assay: dHvH pH:2.49 ; Experimental Assay: dHcal pH:2.66 ; Experimental Assay: Tm pH:2.66 ; Experimental Assay: dHvH pH:2.66 ; Experimental Assay: dHcal pH:2.78 ; Experimental Assay: Tm pH:2.78 ; Experimental Assay: dHvH pH:2.78 ; Experimental Assay: dHcal pH:2.96 ; Experimental Assay: Tm pH:2.96 ; Experimental Assay: dHvH pH:2.96 ; Experimental Assay: dHcal pH:3.09 ; Experimental Assay: Tm pH:3.09 ; Experimental Assay: dHvH pH:3.09 ; Experimental Assay: dHcal pH:2.53 ; Experimental Assay: Tm pH:2.53 ; Experimental Assay: dHvH pH:2.53 ; Experimental Assay: dHvH pH:2.7 ; Experimental Assay: dHcal pH:2.81 ; Experimental Assay: Tm pH:2.81 ; Experimental Assay: dHvH pH:2.81 ; Experimental Assay: dHcal pH:3.04 ; Experimental Assay: Tm pH:3.04 ; Experimental Assay: dHvH pH:3.04 ; Experimental Assay: dHcal pH:3.14 ; Experimental Assay: Tm pH:3.14 ; Experimental Assay: dHvH pH:3.14 ; Experimental Assay: dHcal pH:2.7 ; Experimental Assay: Tm pH:2.7 ; Experimental Assay: dCp ionic:: ; Derived Quantity: dTm pH:2.53 ; Derived Quantity: dTm pH:3.14 ; Derived Quantity: dTm pH:2.81 ; Derived Quantity: dTm pH:2.7
Libraries Mutations for sequence KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV

Structure view and single mutant data analysis

Study data

No weblogo for data of varying length.
Colors: D E R H K S T N Q A V I L M F Y W C G P
 

Data Distribution

Studies with similar sequences (approximate matches)

Correlation with other assays (exact sequence matches)


Relevant UniProtKB Entries

Percent Identity Matching Chains Protein Accession Entry Name
100.0 Lysozyme C P79179 LYSC_GORGO
100.0 Lysozyme C P61626 LYSC_HUMAN
100.0 Lysozyme C P61627 LYSC_PANPA
100.0 Lysozyme C P61628 LYSC_PANTR
99.2 Lysozyme C P79239 LYSC_PONPY
96.9 Lysozyme C P79180 LYSC_HYLLA
100.0 A Actin P60009 ACT_CANGA
100.0 A Actin P60011 ACT_SACBA
100.0 A Actin P60010 ACT_YEAST
98.9 A Actin Q75D00 ACT_ASHGO
97.3 A Actin P17128 ACT_KLULA
96.0 A Actin O74258 ACT_OGAPD
94.9 A Actin Q9UVZ8 ACT_CANDC
94.6 A Actin P14235 ACT_CANAX
93.9 A Actin Q9P4D1 ACT_KOMPG
92.3 A Actin O13419 ACT_BOTFU
92.0 A Actin Q9UVW9 ACTG_ACRCH
92.0 A Actin Q6TCF2 ACT_GAEGA
92.0 A Actin P78711 ACT_NEUCR
92.0 A Actin P20359 ACTG_EMENI
92.0 A Actin P53455 ACT_AJECG
91.7 A Actin Q8X119 ACT_EXODE
91.5 A Actin Q9URS0 ACTG_PENCH
90.7 A Actin P26197 ACT2_ABSGL
90.4 A Actin P48465 ACT_CRYNH
95.0 A Actin A5DQP9 ACT_PICGU
91.2 A Actin Q99023 ACT_HYPJE
90.9 A Actin Q11212 ACT_SPOLI
96.4 A Actin P10982 ACT1_ABSGL
90.8 A Actin P00544 FGR_FSVGR
90.6 A Actin Q39596 ACT_OXYRB
95.6 A Actin P85911 ACT1_PSEMZ
93.8 A Actin Q24733 ACT_DICVI
100.0 G Actin P06396 GELS_HUMAN
99.2 G Actin Q3SX14 GELS_BOVIN
99.2 G Actin P20305 GELS_PIG
98.4 G Actin Q28372 GELS_HORSE
97.6 G Actin P13020 GELS_MOUSE
97.6 G Actin Q68FP1 GELS_RAT