Hydrophobic effect on the stability and folding of a hyperthermophilic protein.


Abstract

Ribonuclease HII from hyperthermophile Thermococcus kodakaraensis (Tk-RNase HII) is a kinetically robust monomeric protein. The conformational stability and folding kinetics of Tk-RNase HII were measured for nine mutant proteins in which a buried larger hydrophobic side chain is replaced by a smaller one (Leu/Ile to Ala). The mutant proteins were destabilized by 8.9 to 22.0 kJ mol(-1) as compared with the wild-type protein. The removal of each -CH(2)- group burial decreased the stability by 5.1 kJ mol(-1) on average in the mutant proteins of Tk-RNase HII examined. This is comparable with the value of 5.3 kJ mol(-1) obtained from experiments for proteins from organisms growing at moderate temperature. We conclude that the hydrophobic residues buried inside protein molecules contribute to the stabilization of hyperthermophilic proteins to a similar extent as proteins at normal temperature. In the folding experiments, the mutant proteins of Tk-RNase HII examined exhibited faster unfolding compared with the wild-type protein. These results indicate that the buried hydrophobic residues strongly contribute to the kinetic robustness of Tk-RNase HII. This is the first report that provides a practical cause of slow unfolding of hyperthermostable proteins. Study holds ProTherm entries: 23115, 23116, 23117, 23118, 23119, 23120, 23121, 23122, 23123, 23124, 23125, 23126, 23127, 23128, 23129, 23130, 23131, 23132, 23133, 23134 Extra Details: hydrophobic residue; stability; folding; hyperthermophilic protein; ribonuclease HII

Submission Details

ID: Yi4QEnNo3

Submitter: Connie Wang

Submission Date: April 24, 2018, 8:54 p.m.

Version: 1

Publication Details
Dong H;Mukaiyama A;Tadokoro T;Koga Y;Takano K;Kanaya S,J. Mol. Biol. (2008) Hydrophobic effect on the stability and folding of a hyperthermophilic protein. PMID:18353366
Additional Information

Structure view and single mutant data analysis

Study data

No weblogo for data of varying length.
Colors: D E R H K S T N Q A V I L M F Y W C G P
 

Data Distribution

Studies with similar sequences (approximate matches)

Correlation with other assays (exact sequence matches)


Relevant PDB Entries

Structure ID Release Date Resolution Structure Title
1IO2 2001-04-18 2.0 Crystal structure of type 2 ribonuclease h from hyperthermophilic archaeon, thermococcus kodakaraensis kod1
2DFH 2007-03-06 2.27 Crystal structure of Tk-RNase HII(1-212)-C
2DFE 2007-03-06 2.4 Crystal structure of Tk-RNase HII(1-200)-C
2DFF 2007-03-06 2.7 Crystal structure of Tk-RNase HII(1-204)-C
1X1P 2006-01-17 2.8 Crystal structure of Tk-RNase HII(1-197)-A(28-42)

Relevant UniProtKB Entries

Percent Identity Matching Chains Protein Accession Entry Name
100.0 Ribonuclease HII O74035 RNH2_THEKO