L-phenylalanine binding and domain organization in human phenylalanine hydroxylase: a differential scanning calorimetry study.


Abstract

Human phenylalanine hydroxylase (hPAH) is a tetrameric enzyme that catalyzes the hydroxylation of L-phenylalanine (L-Phe) to L-tyrosine; a dysfunction of this enzyme causes phenylketonuria. Each subunit in hPAH contains an N-terminal regulatory domain (Ser2-Ser110), a catalytic domain (Asp112-Arg410), and an oligomerization domain (Ser411-Lys452) including dimerization and tetramerization motifs. Two partially overlapping transitions are seen in differential scanning calorimetry (DSC) thermograms for wild-type hPAH in 0.1 M Na-Hepes buffer, 0.1 M NaCl, pH 7.0. Although these transitions are irreversible, studies on their scan-rate dependence support that the equilibrium thermodynamics analysis is permissible in this case. Comparison with the DSC thermograms for truncated forms of the enzyme, studies on the protein and L-Phe concentration effects on the transitions, and structure-energetic calculations based on a modeled structure support that the thermal denaturation of hPAH occurs in three stages: (i) unfolding of the four regulatory domains, which is responsible for the low-temperature calorimetric transition; (ii) unfolding of two (out of the four) catalytic domains, which is responsible for the high-temperature transition; and (iii) irreversible protein denaturation, which is likely responsible for the observed exothermic distortion in the high-temperature side of the high-temperature transition. Stages 1 and 2 do not appear to be two-state processes. We present an approach to the analysis of ligand effects on DSC transition temperatures, which is based on the general binding polynomial formalism and is not restricted to two-state transitions. Application of this approach to the L-Phe effect on the DSC thermograms for hPAH suggests that (i) there are no binding sites for L-Phe in the regulatory domains; therefore, contrary to the common belief, the activation of PAH by L-Phe seems to be the result of its homotropic cooperative binding to the active sites. (ii) The regulatory domain appears to be involved in cooperativity through its interactions with the catalytic and oligomerization domains; thus, upon regulatory domain unfolding, the cooperativity in the binding of L-Phe to the catalytic domains seems to be lost and the value of the L-Phe concentration corresponding to half-saturation is increased. Overall, our results contribute to the understanding of the conformational stability and the substrate-induced cooperative activation of this important enzyme. Study holds ProTherm entries: 15250, 15251 Extra Details: Transition 1 tetrameric enzyme; regulatory domain; high-temperature transition; cooperative activation

Submission Details

ID: Jetx2WiU4

Submitter: Connie Wang

Submission Date: April 24, 2018, 8:46 p.m.

Version: 1

Publication Details
Thórólfsson M;Ibarra-Molero B;Fojan P;Petersen SB;Sanchez-Ruiz JM;Martínez A,Biochemistry (2002) L-phenylalanine binding and domain organization in human phenylalanine hydroxylase: a differential scanning calorimetry study. PMID:12056888
Additional Information

Structure view and single mutant data analysis

Study data

No weblogo for data of varying length.
Colors: D E R H K S T N Q A V I L M F Y W C G P
 

Data Distribution

Studies with similar sequences (approximate matches)

Correlation with other assays (exact sequence matches)


Relevant PDB Entries

Structure ID Release Date Resolution Structure Title
1PHZ 1998-11-11T00:00:00+0000 2.2 STRUCTURE OF PHOSPHORYLATED PHENYLALANINE HYDROXYLASE
2PHM 1998-11-11T00:00:00+0000 2.6 STRUCTURE OF PHENYLALANINE HYDROXYLASE DEPHOSPHORYLATED
5DEN 2015-08-25T00:00:00+0000 2.9 The First Structure of a Full-Length Mammalian Phenylalanine Hydroxylase Reveals the Architecture of an Auto-inhibited Tetramer
5EGQ 2015-10-27T00:00:00+0000 2.5 Structure of tetrameric rat phenylalanine hydroxylase mutant R270K, residues 25-453
5FGJ 2015-12-20T00:00:00+0000 3.6 Structure of tetrameric rat phenylalanine hydroxylase, residues 1-453
1DMW 1999-12-15T00:00:00+0000 2.0 CRYSTAL STRUCTURE OF DOUBLE TRUNCATED HUMAN PHENYLALANINE HYDROXYLASE WITH BOUND 7,8-DIHYDRO-L-BIOPTERIN
1J8T 2001-05-22T00:00:00+0000 1.7 Catalytic Domain of Human Phenylalanine Hydroxylase Fe(II)
1J8U 2001-05-22T00:00:00+0000 1.5 Catalytic Domain of Human Phenylalanine Hydroxylase Fe(II) in Complex with Tetrahydrobiopterin
1KW0 2002-01-28T00:00:00+0000 2.5 Catalytic Domain of Human Phenylalanine Hydroxylase (Fe(II)) in Complex with Tetrahydrobiopterin and Thienylalanine
1LRM 2002-05-15T00:00:00+0000 2.1 Crystal structure of binary complex of the catalytic domain of human phenylalanine hydroxylase with dihydrobiopterin (BH2)

Relevant UniProtKB Entries

Percent Identity Matching Chains Protein Accession Entry Name
100.0 Phenylalanine-4-hydroxylase P00439 PH4H_HUMAN
95.8 Phenylalanine-4-hydroxylase Q2KIH7 PH4H_BOVIN
96.1 Phenylalanine-4-hydroxylase P16331 PH4H_MOUSE
95.5 Phenylalanine-4-hydroxylase P04176 PH4H_RAT