Reversible unfolding of the severe acute respiratory syndrome coronavirus main protease in guanidinium chloride.


Abstract

Chemical denaturant sensitivity of the dimeric main protease from severe acute respiratory syndrome (SARS) coronavirus to guanidinium chloride was examined in terms of fluorescence spectroscopy, circular dichroism, analytical ultracentrifuge, and enzyme activity change. The dimeric enzyme dissociated at guanidinium chloride concentration of <0.4 M, at which the enzymatic activity loss showed close correlation with the subunit dissociation. Further increase in guanidinium chloride induced a reversible biphasic unfolding of the enzyme. The unfolding of the C-terminal domain-truncated enzyme, on the other hand, followed a monophasic unfolding curve. Different mutants of the full-length protease (W31 and W207/W218), with tryptophanyl residue(s) mutated to phenylalanine at the C-terminal or N-terminal domain, respectively, were constructed. Unfolding curves of these mutants were monophasic but corresponded to the first and second phases of the protease, respectively. The unfolding intermediate of the protease thus represented a folded C-terminal domain but an unfolded N-terminal domain, which is enzymatically inactive due to loss of regulatory properties. The various enzyme forms were characterized in terms of hydrophobicity and size-and-shape distributions. We provide direct evidence for the functional role of C-terminal domain in stabilization of the catalytic N-terminal domain of SARS coronavirus main protease. Study holds ProTherm entries: 23604, 23605, 23606, 23607, 23608 Extra Details: Native to intermediate enzymatic activity; unfolding intermediate; hydrophobicity SARS coronavirus

Submission Details

ID: DVi8eLjA4

Submitter: Connie Wang

Submission Date: April 24, 2018, 8:54 p.m.

Version: 1

Publication Details
Chang HP;Chou CY;Chang GG,Biophys. J. (2007) Reversible unfolding of the severe acute respiratory syndrome coronavirus main protease in guanidinium chloride. PMID:17142288
Additional Information

Structure view and single mutant data analysis

Study data

No weblogo for data of varying length.
Colors: D E R H K S T N Q A V I L M F Y W C G P
 

Data Distribution

Studies with similar sequences (approximate matches)

Correlation with other assays (exact sequence matches)


Relevant PDB Entries

Structure ID Release Date Resolution Structure Title
1Q2W 2003-07-26T00:00:00+0000 1.86 X-Ray Crystal Structure of the SARS Coronavirus Main Protease
2FYG 2006-02-07T00:00:00+0000 1.8 Crystal structure of NSP10 from Sars coronavirus
2G9T 2006-03-07T00:00:00+0000 2.1 Crystal structure of the SARS coronavirus nsp10 at 2.1A
2GA6 2006-03-08T00:00:00+0000 2.7 The crystal structure of SARS nsp10 without zinc ion as additive
2K87 2008-09-02T00:00:00+0000 0 NMR STRUCTURE OF A PUTATIVE RNA BINDING PROTEIN (SARS1) FROM SARS CORONAVIRUS
2KAF 2008-11-05T00:00:00+0000 0 Solution structure of the SARS-unique domain-C from the nonstructural protein 3 (nsp3) of the severe acute respiratory syndrome coronavirus
2KQV 2009-11-19T00:00:00+0000 0 SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. I: Structure of the SUD-M domain of SUD-MC
2KQW 2009-11-19T00:00:00+0000 0 SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. II: Structure of the SUD-C domain of SUD-MC
2KYS 2010-06-07T00:00:00+0000 0 NMR Structure of the SARS Coronavirus Nonstructural Protein Nsp7 in Solution at pH 6.5
2LIZ 2011-09-02T00:00:00+0000 0 NMR solution structure of C-terminal domain of SARS-CoV main protease in 2.5M urea

Relevant UniProtKB Entries

Percent Identity Matching Chains Protein Accession Entry Name
100.0 Replicase polyprotein 1ab P0C6X7 R1AB_CVHSA
99.7 Replicase polyprotein 1ab P0C6W6 R1AB_BCRP3
99.3 Replicase polyprotein 1ab P0C6W2 R1AB_BCHK3
99.7 Replicase polyprotein 1ab P0C6V9 R1AB_BC279
100.0 Replicase polyprotein 1ab P0C6U8 R1A_CVHSA
99.7 Replicase polyprotein 1ab P0C6T7 R1A_BCRP3
99.3 Replicase polyprotein 1ab P0C6F8 R1A_BCHK3
99.7 Replicase polyprotein 1ab P0C6F5 R1A_BC279